High-resolution (HR) magnetic resonance imaging (MRI) is crucial for many clinical and research applications. However, achieving it remains costly and constrained by technical trade-offs and experimental limitations. Super-resolution (SR) presents a promising computational approach to overcome these challenges by generating HR images from more affordable low-resolution (LR) scans, potentially improving diagnostic accuracy and efficiency without requiring additional hardware. This survey reviews recent advances in MRI SR techniques, with a focus on deep learning (DL) approaches. It examines DL-based MRI SR methods from the perspectives of computer vision, computational imaging, inverse problems, and MR physics, covering theoretical foundations, architectural designs, learning strategies, benchmark datasets, and performance metrics. We propose a systematic taxonomy to categorize these methods and present an in-depth study of both established and emerging SR techniques applicable to MRI, considering unique challenges in clinical and research contexts. We also highlight open challenges and directions that the community needs to address. Additionally, we provide a collection of essential open-access resources, tools, and tutorials, available on our GitHub: https://github.com/mkhateri/Awesome-MRI-Super-Resolution. IEEE keywords: MRI, Super-Resolution, Deep Learning, Computational Imaging, Inverse Problem, Survey.

Predicting future brain state from a baseline magnetic resonance image (MRI) is a central challenge in neuroimaging and has important implications for studying neurodegenerative diseases such as Alzheimer's disease (AD). Most existing approaches predict future cognitive scores or clinical outcomes, such as conversion from mild cognitive impairment to dementia. Instead, here we investigate longitudinal MRI image-to-image prediction that forecasts a participant's entire brain MRI several years into the future, intrinsically modeling complex, spatially distributed neurodegenerative patterns. We implement and evaluate five deep learning architectures (UNet, U2-Net, UNETR, Time-Embedding UNet, and ODE-UNet) on two longitudinal cohorts (ADNI and AIBL). Predicted follow-up MRIs are directly compared with the actual follow-up scans using metrics that capture global similarity and local differences. The best performing models achieve high-fidelity predictions, and all models generalize well to an independent external dataset, demonstrating robust cross-cohort performance. Our results indicate that deep learning can reliably predict participant-specific brain MRI at the voxel level, offering new opportunities for individualized prognosis.

In this paper, we establish an upper bound on the return gap between the oracle expert policy and an optimal decision tree policy. This enables us to recast the DT extraction problem into a novel non-euclidean clustering problem over the local observation and action values space of each agent, with action values as cluster labels and the upper bound on the return gap as clustering loss.

This paper reports on pretraining ModernBERT encoder models in six different sizes, ranging from 51M to 475M parameters, with a focus on limited multilingualism, emphasizing languages relevant to Finland. Our models are competitive with, or superior to, existing multilingual models. They outperform monolingual models on tasks that require a context longer than 512 tokens. We present empirical results on using different data in the final stage of training. The code and models are publicly released.

Background and Objective: Advances in electron microscopy (EM) now allow three-dimensional (3D) imaging of hundreds of micrometers of tissue with nanometer-scale resolution, providing new opportunities to study the ultra-structure of the brain. In this work, we introduce a freely available Matlab-based gACSON software for visualization, segmentation, assessment, and morphology analysis of myelinated axons in 3D-EM volumes of brain tissue samples. Methods: The software is equipped with a graphical user interface (GUI). It automatically segments the intra-axonal space of myelinated axons and their corresponding myelin sheaths and allows manual segmentation, proofreading, and interactive correction of the segmented components. Results: We illustrate the use of the software by segmenting and analyzing myelinated axons in six 3D-EM volumes of rat somatosensory cortex after sham surgery or traumatic brain injury (TBI). Our results suggest that the equivalent diameter of myelinated axons in somatosensory cortex was decreased in TBI animals five months after the injury. Conclusions: Our results indicate that gACSON is a valuable tool for visualization, segmentation, assessment, and morphology analysis of myelinated axons in 3D-EM volumes. Introduction Assessing the structure of the brain is critical to better understanding its normal and abnormal functioning. Advances in electron microscopy (EM) now allow three-dimensional (3D) imaging of hundreds of micrometers of tissue with nanometer-scale resolution, providing new opportunities to study the ultrastructure of the brain [1, 2]. Quantitative analysis of 3D-EM data, such as morphological assessment of ultrastructure, spatial distribution or connectivity of cells, requires the instance segmentation of individual ultrastructural components [3, 4, 5]. Performing this segmentation manually is tedious, if not impossible, due to the large size and enormous number of components in typical 3D-EM data.

Spiking Neural Networks (SNNs) offer low-latency and energy-efficient decision making on neuromorphic hardware, making them attractive for Reinforcement Learning (RL) in resource-constrained edge devices. However, most RL algorithms for continuous control are designed for Artificial Neural Networks (ANNs), particularly the target network soft update mechanism, which conflicts with the discrete and non-differentiable dynamics of spiking neurons. We show that this mismatch destabilizes SNN training and degrades performance. To bridge the gap between discrete SNNs and continuous-control algorithms, we propose a novel proxy target framework. The proxy network introduces continuous and differentiable dynamics that enable smooth target updates, stabilizing the learning process. Since the proxy operates only during training, the deployed SNN remains fully energy-efficient with no additional inference overhead. Extensive experiments on continuous control benchmarks demonstrate that our framework consistently improves stability and achieves up to $32\%$ higher performance across various spiking neuron models. Notably, to the best of our knowledge, this is the first approach that enables SNNs with simple Leaky Integrate and Fire (LIF) neurons to surpass their ANN counterparts in continuous control. This work highlights the importance of SNN-tailored RL algorithms and paves the way for neuromorphic agents that combine high performance with low power consumption. Code is available at https://github.com/xuzijie32/Proxy-Target.

State - of - the - art (SOTA) Convolutional Neural Networks (CNNs) are criticized for their extensive computational power, long training times, and large datasets . To overcome this limitation, we propose a reasonable network (R - Net), a lightweight CNN only to detect and classify colorectal cancer (CRC) using the Enteroscope Biopsy Histopathological Hematoxylin and Eosin Image Dataset (EBHI) . Furthermore, six SOTA CNNs, including Multipath - based CNNs (DenseNet121, ResNet50), Depth - based CNNs (InceptionV3), width - based multi - connection CNNs (Xception), depth - wise separable convolutions (MobileNetV2), spatial exploitation - based CNNs (VGG16), Transfer learning, and two ensemble models are also tested on the same dataset . The ensemble models are a multipath - depth - width combination (DenseNet121 - InceptionV3 - Xception) and a multipath - depth - spatial combination ( ResNet18 - InceptionV3 - VGG16) . However, the proposed R - Net lightweight achieved 99.37% accuracy, outperforming MobileNet ( 95.83%) and ResNet50 ( 96.94%). Most importantly, to understand the decision - making of R - Net, Explainable AI such as SHAP, LIME, and Grad - CAM are integrated to visualize which parts of the EBHI image contribute to the detection and classification process of R - Net . The main novelty of this research lies in building a reliable, lightweight CNN R - Net that requires fewer computing resources yet maintains strong prediction results. SOTA CNN s, transfer learning, and ensemble models also extend our knowledge on CRC classification and detection. XAI functionality and the impact of pixel intensity on correct and incorrect classification images are also some novelties in CRC detection and classification.

We present SatSkylines, a 3D building generation approach that takes satellite imagery and coarse geometric priors. Without proper geometric guidance, existing image-based 3D generation methods struggle to recover accurate building structures from the top-down views of satellite images alone. On the other hand, 3D detailization methods tend to rely heavily on highly detailed voxel inputs and fail to produce satisfying results from simple priors such as cuboids. To address these issues, our key idea is to model the transformation from interpolated noisy coarse priors to detailed geometries, enabling flexible geometric control without additional computational cost. We have further developed Skylines-50K, a large-scale dataset of over 50,000 unique and stylized 3D building assets in order to support the generations of detailed building models. Extensive evaluations indicate the effectiveness of our model and strong generalization ability.

There is no much doubt that biotic interactions shape community assembly and ultimately the spatial co-variations between species. There is a hope that the signal of these biotic interactions can be observed and retrieved by investigating the spatial associations between species while accounting for the direct effects of the environment. By definition, biotic interactions can be both symmetric and asymmetric. Yet, most models that attempt to retrieve species associations from co-occurrence or co-abundance data internally assume symmetric relationships between species. Here, we propose and validate a machine-learning framework able to retrieve bidirectional associations by analyzing species community and environmental data. Our framework (1) models pairwise species associations as directed influences from a source to a target species, parameterized with two species-specific latent embeddings: the effect of the source species on the community, and the response of the target species to the community; and (2) jointly fits these associations within a multi-species conditional generative model with different modes of interactions between environmental drivers and biotic associations. Using both simulated and empirical data, we demonstrate the ability of our framework to recover known asymmetric and symmetric associations and highlight the properties of the learned association networks. By comparing our approach to other existing models such as joint species distribution models and probabilistic graphical models, we show its superior capacity at retrieving symmetric and asymmetric interactions. The framework is intuitive, modular and broadly applicable across various taxonomic groups.